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- 1. The first step in the payoff phase of glycolysis is catalyzed by the enzyme glyceraldehyde 3-phosphate dehydrogenase, an enzyme that contains a nucleophilic cysteine playing a central role in the reaction. A) In the direction of gluconeogenesis, what reaction does this enzyme catalyze? AG° = -6.3 kcal/mol for this reaction in the direction of gluconeogenesis. Based on what you know about the substrates involved, provide two chemical reasons as to why the AGO of this reaction is negative.28. Sucrose in human nutrition is hydrolyzed into its monosaccharide components by sucrase. Glucose can enter directly in cellular respiration while fructose is predominantly metabolized in the liver as illustrated in the figure below. Suppose 180 molecules of sucrose are to be catabolized, what is the net ATP production during glycolysis considering both substrate-level phosphorylation and oxidative phosphorylation of NADH shuttled by malate and aspartate to the mitochondrion? [Hint: Sum of net ATP yield in substrate-level phosphorylation and ATP from glycolytic NADH] Fructose Glucose Glycogen ATP- ATP- ADP4 ADP+ hexokinase glucokinase Glucose-6-P→→→→→ Glucose-1-P Fructose-6-P Fructose-1,6-BP fructokinase rapid Fructose-1-P Rate aldolase B limiting Dihydroxyacetone-P Glyceraldehyde ATP- triose kinase ADP Glyceraldehyde-3-P Liver Also intestinal cells and kidney cortex O a. 810 ATP O b. 1260 ATP O c. 1800 ATP d. 2520 ATP PFK-1 Dihydroxy- acetone-P Lactate F1,6bisphosphatase…2B. Calculate the total number of ATP that will be generated from the complete B-oxidation of oncobic acid (CH:(CH,),CH=CH(CH,),COOH; 15:1 cis-A9) in an organism that has all the standard required enzymes for metabolism but which pumps only 2 H" in complex I, 0 H' in complex II, 2 H* in complex III and 4 H' in complex IV. The F,F, ATPase is composed of 3 a/ß subunits and 10 c subunits. Show all of your calculations. HO
- 3. A recently discovered mutant yeast has a shorter glycolytic pathway, and with a new enzyme that catalyzes the reaction: Glyceraldehyde-3-P + H₂ + NAD+ ‒‒‒‒‒‒> 3-phosphoglycerate + NADH+H* Would shortening the glycolytic pathway in this way benefit the cell? Explain. Consider metabolic outcomes only in anaerobic conditions.1a. If you wanted you could take a glucose molecule and convert it to pyruvate via glycolysis and convert it back to glucose via gluconeogenesis. What is the cost of doing so in ATP equivalents? Show how you determine the cost via reactions (no structures). Explain in bioenergetic terms how the conversion of pyruvate to phosphoenolpyruvate in gluconeogenesis overcomes the large, negative standard free- energy change of the pyruvate kinase reaction in glycolysis. b. C. The consumption of alcohol (ethanol), especially after periods of strenuous activity or after not eating for several hours, results in a deficiency of glucose in the blood, a condition known as hypoglycemia. The first step in the metabolism of ethanol by the liver is oxidation to acetaldehyde, catalyzed by liver alcohol dehydrogenase: CH3CH2OH + NAD+ -> CH3CHO + NADH + H+ Explain how this reaction inhibits the transformation of lactate to pyruvate. Why does this lead to hypoglycemia?1. Cyanide, oligomycin, and 2,4-dinitrophenol are all inhibitors of oxidative phosphorylation in mitochon- dria. Provide an explanation to the following conditions regarding these potent inhibitors. (a) Explain why adding cyanide to an active in vitro suspension of mitochondria blocks ATP synthesis. What happens to the rate of ATP synthesis when 2,4-dinitrophenol is added to this mitochon- drial suspension after it was treated with cyanide? (b) Explain why the rate of oxygen consumption decreases in an in vitro suspension of mito- chondria when oligomycin is added. What happens to the rate of oxygen consumption in this oligomycin- inhibited system after adding 2,4-dinitrophenol? Explain.
- 9) After the run, what happens to the glucose under anaerobic conditions? Explain, (think the cori cycle)A4. what conformational state is stabilized by y in atp synthase? why might achieving this state require energy input from the pmf?10. Glycogen, as the main storage form of glucosc, is an important energy reservoir. Describe the role of glycogen in providing the body with energy. To answer: a) write a scheme for glycogen mobilization, and oxidation of the end product to CO, and H,O; b) mark the reactions associated with ATP synthesis and ATP consumption in the scheme, calculate the oxidation energy yield of I mole of the final product resulting from glycogen breakdown; 1L An unconscious man with sions of alcobol poisonino was taken to the hosnital
- 6. In an experiment, students used liver tissuc samples to study the cthanol metabolism and the possibility of ethanol conversion into glucose. The ethanol introduction in the investigated medium didn't lead to glucose level increase. Why is it impossible to convert ethanol to glucose? For the answer: a) provide a scheme of gluconcogenesis, indicate the substrates of this process; b) write the reaction of ethanol oxidation in the liver; c) explain whether it is possible to use the metabolites of ethanol catabolism for the glucose synthesis.. Because of the position of arsenic in the periodic table, arsenate (AsO}-) is chemically similar to inorganic phosphate and is used by phosphate-requiring enzymes as an alternative substrate. However, organic arsenates are quite unstable and spontaneously hydrolyze. Arsenate is known to inhibit ATP production in glycolysis. Identify the target enzyme, and explain the mechanism of inhibition.19. Calculate the standard free-energy change of the reaction catalyzed by the enzyme phosphoglucomutase, given the equilibrium concentration of 1.0 mM glucose-1-phosphate and 19 mM glucose-6-phosphate at 25 C. Glucose-6-phosphate Glucose-1-phosphate