Horizontal sequence :RIVL Vertical sequence:FMK Scoring rules: g/o = -3, g/e = -1, match or mismatch - from PAM250 substitution matrix below. SW algorithm. 1. Complete the scoring matrix. Scoring matrix with PAM250 scores: R I V L F M K 2. Set up, initialize and complete the SW matrix. 3. Retrace, align and score alignment(s). Use the arrows and circles for the matrix and path(s).
Horizontal sequence :RIVL
Vertical sequence:FMK
Scoring rules: g/o = -3, g/e = -1, match or mismatch - from PAM250 substitution matrix below.
- SW
algorithm .
1. Complete the scoring matrix.
Scoring matrix with PAM250 scores:
| R | I | V | L | |
| F | ||||
| M | ||||
| K |
2. Set up, initialize and complete the SW matrix.
3. Retrace, align and score alignment(s).
Use the arrows and circles for the matrix and path(s).
| R | I | V | L | ||
| F | |||||
| M | |||||
| K |
Align and score all optimal alignments here.
PLZ the arrows and circles for the matrix and path(s) AND SHOW ALL possible Alignment
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